Download Sra Toolkit Mac Terminal

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The hisat program can automatically download SRA data as needed. In some cases, users may want to download SRA data and retain a copy. To download using NCBI's 'prefetch' tool, you would need to set up your own configuration file for the NCBI SRA toolkit. Use the command vdb-config to set up a directory for downloading. This intentionally vulnerable web app with e-commerce functionality lets you simulate attacks against technologies used in modern applications. A native Ruby implementation of the SMB Protocol Family; this library currently includes both a Client level and Packet level support. A user can parse.

SRA toolkit contains important tools to manipulate SRA (Short Read Archive) file.
The objective of this article is to show you, how to install SRA toolkit on Ubuntu/Linux system.

Installation


1. Download the last version for your computer operating system from here

Use the following command on Linux to download the file sratoolkit.2.4.1-ubuntu64.tar.gz:
Code BASH :

2. Modify your .bashrc file so that when you type 'fastq-dump' , for example, it calls the program:
Code BASH :


Directory is equal to the directory that you have installed sratoolkit in. Example:
Code BASH :


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